species:   Bodot
pid:       PID1073
parent:    Bd-milR26
paralog:   
locus:     MU009149.1:3431508-3431690
matures:   ['GGAGGAGAAGCCCGUCGGCGGC', 'CGUUGGCGCGCCUCUCCUCCCU']
srr:       SRR8374850
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram MU009149.1:3431508-3431690

0 out of bounds
7 alignments
7 proper strand
6 stranded perfect matches

                                                        ************************                                                                     ************************          
AUGGCGCCUACCAGAGCACCAAUACGUCCAGCCUUCAGCCGCCUCAUUACUUCGAGUCCGUUGGCGCGCCUCUCCUCCCUCUUCCCAUGCCCGAAAUGGAGAUGCACCGUCAGAUCCAGCACGAGCAGCAGCGCGUUGAUUCGCACAUGAAGGAGGAGAAGCCCGUCGGCGGCGUCUCCGCCA
..((((.((...((.((.............))))..)).))))..........((..(((((((((.((.((((((((.((......(((.((...((((..((......))..))))...)).)))...(.(((......))).)..)).)))))))).)).)))))))))..)).......
-------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGAGAAGCCCGUCGGCGGC---------- l=22 a=0 c
----------------------------------------------------------CGUUGGCGCGCCUCUCCUCCCU------------------------------------------------------------------------------------------------------- l=22 a=0 c*
--------------------------------------------CAUUACUUCGAGUCCGUUGGCGCGC------------------------------------------------------------------------------------------------------------------ l=25 a=2 ma
----------------------------------------------------------CGUUGGCGCGCCUCUCCUCCCU------------------------------------------------------------------------------------------------------- l=22 a=0 ma*

--------------------------------------------CAUUACUUCGAGUCCGUUGGCGCGC------------------------------------------------------------------------------------------------------------------ l=25 a=2 (ma)
----------------------------------------------UUACUUCGAGUCCGUUGGCGCGCCc---------------------------------------------------------------------------------------------------------------- l=25 a=1 
--------------------------------------------------UUCGAGUCCGUUGGCGCGCCUCU-------------------------------------------------------------------------------------------------------------- l=23 a=1 
--------------------------------------------------------------------------------------------------------CACCGUCAGAUCCAGCACGAGC--------------------------------------------------------- l=22 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------CACAUGAAGGAGGAGAAGCC-------------------- l=20 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------AAGGAGGAGAAGCCCGUCGGCGGC---------- l=24 a=1 

mb-00110
ax-1011001
ku-01
ss-101011111100
fn-111
